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Financial Management

How to Prepare for a Non-profit Audit: A Complete Guide

April 27, 2023 GrantFunds Editorial Team

How to Prepare for a Non-profit Audit: A Complete Guide

Why Audits Matter for Grant-Seeking Non-profits

Independent financial audits are required by most significant funders as a condition of grant eligibility. US federal grants above $750,000 require a Single Audit (formerly A-133 audit) under 2 CFR 200. Most large private foundations require audited financial statements for grant applications above certain thresholds — typically $100,000 to $250,000, though the threshold varies by funder. International donors including USAID, FCDO, and the EU increasingly require audited financials as part of pre-award assessment. Beyond funder requirements, a clean audit opinion from an independent public accountant is one of the most powerful signals of organizational financial credibility available to a non-profit. Conversely, a qualified audit opinion, a finding of material weakness in internal controls, or significant audit adjustments in previously submitted financial statements all raise serious red flags for program officers conducting due diligence.

Selecting the Right Auditor

Not all auditors are equally qualified to audit non-profit organizations. Non-profit accounting has distinctive features — fund accounting, restricted asset management, grant compliance requirements, and specific financial statement formats — that require auditors with specific expertise and experience. When selecting an auditor, look for: a CPA firm with a significant non-profit practice and demonstrable experience auditing organizations similar to yours in size and sector; auditors who are familiar with Government Auditing Standards (the "Yellow Book") if you receive federal funding; and a firm whose fees are within your budget without compromising audit quality. Obtain competitive proposals from three or more firms, check references from current non-profit clients of each firm, and negotiate an engagement letter that clearly specifies the scope of work, deliverables, timeline, and fee structure. Rotate your audit firm periodically — every five to seven years is common practice — to maintain auditor independence and bring fresh perspective to your financial controls review.

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Preparing Your Financial Records

The quality of your audit preparation directly determines the cost, duration, and outcome of your audit. Organizations that present auditors with well-organized, complete financial records, reconciled accounts, and clear documentation of all significant transactions consistently receive faster, cheaper, and cleaner audits than those whose books require significant auditor cleanup work. Audit preparation typically includes: completing and documenting all year-end bank and account reconciliations; preparing a trial balance and financial statements in draft form; organizing supporting documentation for all significant transactions, including grant agreements for all active grants; preparing a schedule of grants receivable and deferred revenue; compiling a fixed assets schedule with supporting documentation; and preparing a schedule of payables and accruals with backup. The more of this work your finance staff completes before the auditor arrives, the less auditor time — which you pay for by the hour — is spent doing preparation that your team should have done.

Managing Audit Findings Constructively

Audit findings — observations by the auditor about weaknesses in your financial controls or compliance — are uncomfortable but valuable. They identify real organizational vulnerabilities before they become financial losses or funder compliance violations. When your auditor identifies a finding, respond constructively: take the finding seriously regardless of how minor it seems, develop a specific management response that describes the corrective action you will take and the timeline for implementation, actually implement the corrective action and document that you've done so, and follow up with the auditor in the next year's engagement to confirm the finding has been resolved. A pattern of unresolved repeat findings — the same weaknesses appearing in successive audit reports — is a serious red flag for funders and board members. An organization that receives a finding, responds to it seriously, implements corrections, and shows no repeat finding the following year demonstrates exactly the kind of learning and improvement culture that sophisticated funders value.

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